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Add Systems Biology tools #13

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drbecavin opened this issue Apr 10, 2019 · 2 comments
Open

Add Systems Biology tools #13

drbecavin opened this issue Apr 10, 2019 · 2 comments
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Data Parsing enhancement New feature or request
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Clean Bacnet for publication

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These tools for co-expression network construction exists already but only for Listeriomics datasets. It needs to be generalized.

Need to use bacnet.scripts.listeriomics.SystemsBiologyListeriomics and create bacnet.scripts.database.SystemsBiologyCreation
@drbecavin drbecavin added Data Parsing enhancement New feature or request labels Apr 10, 2019
@drbecavin drbecavin changed the title Fix Systems Biology tools creation Add Systems Biology tools Apr 10, 2019
@drbecavin drbecavin moved this from To do to In progress in Clean Bacnet for publication Apr 23, 2019
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drbecavin commented Apr 25, 2019 •
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Added tools for coexpression network creation.
Add interface in bacnet.rap.setup for that.
Issue #29

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Need to check : Expression.summarize(expTemp, genome);
in TranscriptomesCreation.createLogfcTranscriptomeTable(bioConds, logs, true);
Not sure that AllDataType_Listeria monocytogenes EGD-e.excel is created without bugs

@drbecavin drbecavin self-assigned this Aug 5, 2019
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Data Parsing enhancement New feature or request
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Clean Bacnet for publication
  
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