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Yersiniomics - Fix all graphical errors #39

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drbecavin opened this issue Jun 11, 2019 · 5 comments
Open

Yersiniomics - Fix all graphical errors #39

drbecavin opened this issue Jun 11, 2019 · 5 comments
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@drbecavin
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Yersiniomics Every issue for Yersiniomics database creation/update
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Prepare Yersiniomics website publication

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@drbecavin
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Fix all errors
@drbecavin drbecavin created this issue from a note in Prepare Yersiniomics website publication (To do) Jun 11, 2019
@drbecavin drbecavin added the Yersiniomics Every issue for Yersiniomics database creation/update label Jun 11, 2019
@drbecavin drbecavin self-assigned this Aug 5, 2019
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• trier les genomes par phylogeny
• gene name dans Yersinia et identifiant YP01842
• double click sur gene dans GeneView ne marche pas
• lien ncbi pour le gene
• Send to blast - ne marche pas
• Homolog a lancer
• Pour quel jeu de données on a expression brut
• 26 et 37 a enlever dans la description
• rajouter dans transcriptome_Comparison le lien ArrayExpress
• cut-off sur la taille des chromosomes a enlever (Pestis CO92 4 chromo)
• N/A in array express technoId
• Afficher nb gene mesuré par microarray
• irp2, fyua, psn, fur pas trouvé dans CO92
• Add missing proteomics files
• remove Listeria in Proteomics table
• Localization in proteomics
• proteomics heat map display only red stuff ?
• gene_name in proteomics heat map
• search gene protein  in heat map transcriptomics
• information about protein detection missing in proteomics table, nb of proteins
• 4 RNASeqs
• YP_ for vaccinology

@drbecavin drbecavin moved this from To do to In progress in Prepare Yersiniomics website publication Aug 22, 2019
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SOLVED:

  • trier les genomes par phylogeny
    • double click sur gene dans GeneView ne marche pas
    • lien ncbi pour le gene
    • Homolog a lancer
    • Pour quel jeu de données on a expression brut
    • cut-off sur la taille des chromosomes a enlever (Pestis CO92 4 chromo)
    • remove Listeria in Proteomics table
    • 4 RNASeqs

@drbecavin
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STILL TO DO:
• gene name dans Yersinia et identifiant YP01842
• 26 et 37 a enlever dans la description
• rajouter dans transcriptome_Comparison le lien ArrayExpress
• N/A in array express technoId
• Afficher nb gene mesuré par microarray
• irp2, fyua, psn, fur pas trouvé dans CO92
• Add missing proteomics files
• information about protein detection missing in proteomics table, nb of proteins
• YP_ for vaccinology

@drbecavin
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response :

  • which gene name is it YP01842 ?
  • 26 and 37 what ? remove that !
  • done
  • done
  • TO DO
  • Added manually in CO92 2.fna (need to convert genome again after)
    irp2 no homolog present between CO92 and CO92 2 need to check why
  • done
  • done
  • See vaccinology issue Yersiniomics - Add Vaccinology tools #41

Prepare Yersiniomics website publication automation moved this from In progress to Done Oct 2, 2019
@drbecavin drbecavin reopened this Oct 7, 2019
Prepare Yersiniomics website publication automation moved this from Done to In progress Oct 7, 2019
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  • Add Yersiniomics wiki

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Yersiniomics Every issue for Yersiniomics database creation/update
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