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Biological Data Science Collaboratory

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  1. phyloRNAanalysis phyloRNAanalysis Public

    A phylogenetic analysis from scRNA-seq data using both expression levels and identified SNVs

    R 7 1

  2. Pint Pint Public

    Fast interactions lasso for sparse data

    C 6

  3. beast-phylonco beast-phylonco Public

    A BEAST2 package for single-cell cancer evolution

    Java 6 2

  4. phyloRNA phyloRNA Public

    A package to facilitate a phylogenetic analysis of scRNAseq data

    R 6 1

  5. treeOclock treeOclock Public

    Implementation of algorithms in the RNNI space, e.g. FINDPATH

    C 3 1

  6. beter beter Public

    R package to programatically create BEAST2 XMLs

    R 2

Repositories

Showing 10 of 26 repositories
  • beast-phylonco Public

    A BEAST2 package for single-cell cancer evolution

    bioDS/beast-phylonco’s past year of commit activity
    Java 6 LGPL-2.1 2 14 0 Updated Jul 17, 2024
  • lab Public

    Biological Data Science Lab website

    bioDS/lab’s past year of commit activity
    HTML 0 0 1 0 Updated Jul 5, 2024
  • VSTExprPhylo Public

    Scripts and analyses in Visium Spatial Transcriptomics phylogenetic analyses paper

    bioDS/VSTExprPhylo’s past year of commit activity
    R 0 0 0 0 Updated Jun 12, 2024
  • tetres Public

    Package for discrete time trees

    bioDS/tetres’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Apr 11, 2024
  • Pint Public

    Fast interactions lasso for sparse data

    bioDS/Pint’s past year of commit activity
    C 6 MIT 0 0 0 Updated Mar 26, 2024
  • FBD-dLTTs Public

    Simulations for identifiability paper

    bioDS/FBD-dLTTs’s past year of commit activity
    R 0 0 0 0 Updated Feb 8, 2024
  • castor Public Forked from cran/castor

    Castor fork for sampled ancestor trees

    bioDS/castor’s past year of commit activity
    C++ 0 1 0 0 Updated Jan 21, 2024
  • mixed_speciation_stratigraphic-ranges Public Forked from jugne/stratigraphic-ranges
    bioDS/mixed_speciation_stratigraphic-ranges’s past year of commit activity
    Java 0 4 0 0 Updated Dec 19, 2023
  • rrnni Public

    R package for RNNI distance

    bioDS/rrnni’s past year of commit activity
    C 1 GPL-3.0 1 0 0 Updated Aug 25, 2023
  • Centroid-Code Public

    This repository contains a Python implementation of the Centroid algorithm and a script to generate simulated datasets.

    bioDS/Centroid-Code’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 15, 2023
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