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Refactor docs and improve chapter readability #247

Refactor docs and improve chapter readability

Refactor docs and improve chapter readability #247

Triggered via pull request July 3, 2024 20:33
Status Failure
Total duration 2m 49s
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on: pull_request
Matrix: test
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1 error, 5 warnings, and 1 notice
Documentation
Process completed with exit code 1.
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`
Julia nightly - ubuntu-latest - x64 - pull_request
Codecov: Failed to properly create commit: The process '/home/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Julia nightly - macOS-latest - x64 - pull_request
Codecov: Failed to properly create commit: The process '/Users/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Julia nightly - windows-latest - x64 - pull_request
Codecov: Failed to properly create commit: The process 'D:\a\_actions\codecov\codecov-action\v4\dist\codecov.exe' failed with exit code 1
Documentation: ../../../.julia/packages/Documenter/qoyeC/src/utilities/utilities.jl#L46
Cannot resolve @ref for md"[`lordr`](@ref)" in src/api.md. - No docstring found in doc for binding `GeneFinder.lordr`. - No docstring found in doc for binding `GeneFinder.lordr`.
Documentation: ../../../.julia/packages/Documenter/qoyeC/src/utilities/utilities.jl#L46
4 docstrings not included in the manual: GeneFinder.iscoding GeneFinder.fasta2bioseq :: Tuple{AbstractString} GeneFinder.hasprematurestop :: Union{Tuple{Union{BioSequences.LongDNA{N}, BioSequences.LongSubSeq{BioSequences.DNAAlphabet{N}}}}, Tuple{N}} where N GeneFinder.lordr :: Union{Tuple{Union{BioSequences.LongDNA{N}, BioSequences.LongSubSeq{BioSequences.DNAAlphabet{N}}}}, Tuple{N}} where N These are docstrings in the checked modules (configured with the modules keyword) that are not included in canonical @docs or @autodocs blocks.