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bugfix driver annotations #157

bugfix driver annotations

bugfix driver annotations #157

Re-run triggered October 18, 2023 14:36
Status Failure
Total duration 1d 19h 59m 23s
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R-CMD-check.yaml

on: push
Matrix: R-CMD-check
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1 error and 43 warnings
ubuntu-18.04 (release)
This request was automatically failed because there were no enabled runners online to process the request for more than 1 days.
macOS-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (release)
plot_SBS.Rd:14: unexpected section header '\value'
macOS-latest (release)
plot_SBS.Rd:17: unexpected section header '\description'
macOS-latest (release)
plot_SBS.Rd:24: unexpected section header '\examples'
macOS-latest (release)
plot_SBS.Rd:33: unexpected END_OF_INPUT '
macOS-latest (release)
Found the following significant warnings:
macOS-latest (release)
Found the following file with non-ASCII characters:
macOS-latest (release)
'::' or ':::' imports not declared from:
macOS-latest (release)
prepare_Rd: augment_with_vep.Rd:15-17: Dropping empty section \value
macOS-latest (release)
Codoc mismatches from documentation object 'annotate_variants':
macOS-latest (release)
Undocumented arguments in documentation object 'as_maftools_obj'
macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘easypar’
macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
macOS-latest (release)
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
macOS-latest (release)
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
macOS-latest (release)
replacing previous import ‘cli::num_ansi_colors’ by ‘crayon::num_ansi_colors’ when loading ‘BMix’
macOS-latest (release)
replacing previous import ‘crayon::%+%’ by ‘ggplot2::%+%’ when loading ‘BMix’
r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
windows-latest (release)
The following actions uses node12 which is deprecated and will be forced to run on node16: r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'easypar'
windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
windows-latest (release)
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
windows-latest (release)
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
windows-latest (release)
replacing previous import 'cli::num_ansi_colors' by 'crayon::num_ansi_colors' when loading 'BMix'
windows-latest (release)
replacing previous import 'crayon::%+%' by 'ggplot2::%+%' when loading 'BMix'
windows-latest (release)
plot_SBS.Rd:14: unexpected section header '\value'
windows-latest (release)
plot_SBS.Rd:17: unexpected section header '\description'
windows-latest (release)
plot_SBS.Rd:24: unexpected section header '\examples'
windows-latest (release)
plot_SBS.Rd:33: unexpected END_OF_INPUT '
windows-latest (release)
Found the following significant warnings:
windows-latest (release)
Found the following file with non-ASCII characters:
windows-latest (release)
'::' or ':::' imports not declared from:
windows-latest (release)
prepare_Rd: augment_with_vep.Rd:15-17: Dropping empty section \value
windows-latest (release)
Codoc mismatches from documentation object 'annotate_variants':
windows-latest (release)
Undocumented arguments in documentation object 'as_maftools_obj'
r-lib/actions/setup-pandoc@v1 is deprecated.
r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.
R-CMD-check
The ubuntu-18.04 environment is deprecated, consider switching to ubuntu-20.04(ubuntu-latest), or ubuntu-22.04 instead. For more details see https://github.com/actions/virtual-environments/issues/6002