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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 128 43

Repositories

Showing 10 of 94 repositories
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    cbg-ethz/LolliPop’s past year of commit activity
    Jupyter Notebook 4 GPL-3.0 0 0 0 Updated Jul 5, 2024
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 2 Updated Jul 3, 2024
  • V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    cbg-ethz/V-pipe’s past year of commit activity
    Jupyter Notebook 128 Apache-2.0 43 28 3 Updated Jun 28, 2024
  • bmi Public

    Mutual information estimators and benchmark

    cbg-ethz/bmi’s past year of commit activity
    Python 25 MIT 4 16 2 Updated Jun 28, 2024
  • metMHN Public

    This is a adaptation to MHN so that it works on metastasis

    cbg-ethz/metMHN’s past year of commit activity
    Python 4 MIT 2 0 0 Updated Jun 28, 2024
  • mnem Public

    Mixture Nested Effects Models - https://doi.org/10.1093/bioinformatics/bty602 - https://bioconductor.org/packages/mnem

    cbg-ethz/mnem’s past year of commit activity
    R 4 3 0 0 Updated Jun 19, 2024
  • Jnotype Public

    Exploratory analysis of binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 1 MIT 1 6 1 Updated Jun 18, 2024
  • BnpC Public

    Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates

    cbg-ethz/BnpC’s past year of commit activity
    Python 17 MIT 4 8 1 Updated Jun 18, 2024
  • SCATrEx Public

    Map single-cell transcriptomes to copy number evolutionary trees.

    cbg-ethz/SCATrEx’s past year of commit activity
    Python 13 1 3 0 Updated Jun 17, 2024
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 14 GPL-3.0 0 0 0 Updated Jun 11, 2024
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