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pangolin

This is a SARS-CoV-2 sequencing project done at the BSSE relying on V-pipe (doi:10.1093/bioinformatics/btab015) to analyse Illumina data done on positive swabs test samples for the genomic surveillance of the COVID-19 pandemic in Switzerland and on wastewater samples provided by EPFL and Eawag.

pipeline

for the V-pipe pipeline, see:

wastewater

for the code used in wastewater analysis, see:

video presentation

Short Oral presentation done at the ECCVID conference in September 2020: