Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Assembly: fix formatting warnings. #254

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Assembly: fix formatting warnings. #254

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
15 changes: 8 additions & 7 deletions Assembly.cpp
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,7 @@
#include <stdlib.h>
#include <assert.h>
#include <zlib.h>
#include <inttypes.h>
#include "Assembly.h"
#include "Process_Read.h"
#include "CommandLines.h"
Expand Down Expand Up @@ -226,7 +227,7 @@ int debug_cigar(Cigar_record* cigar, char* pre_read, int pre_length, char* new_r

if((int)cigar->new_read_length != new_length)
{
fprintf(stderr, "cigar->new_read_length: %d, new_length: %d\n", cigar->new_read_length, new_length);
fprintf(stderr, "cigar->new_read_length: %" PRIu32 ", new_length: %d\n", cigar->new_read_length, new_length);
}
}

Expand Down Expand Up @@ -652,7 +653,7 @@ static void worker_ovec_related_reads(void *data, long i, int tid)
{
if(b->olist.list[k].is_match != 1) continue;
fprintf(R_INF_FLAG.fp, "%.*s\n", (int)Get_NAME_LENGTH((R_INF), b->olist.list[k].y_id), Get_NAME((R_INF), b->olist.list[k].y_id));
fprintf(R_INF_FLAG.fp, "qs: %u, qe: %u, ts: %u, te: %u, rev: %u, strong: %u, no_l_indel: %u, len: %lu\n",
fprintf(R_INF_FLAG.fp, "qs: %u, qe: %u, ts: %u, te: %u, rev: %u, strong: %" PRId8 ", no_l_indel: %u, len: %lu\n",
b->olist.list[k].x_pos_s, b->olist.list[k].x_pos_e, b->olist.list[k].y_pos_s, b->olist.list[k].y_pos_e,
b->olist.list[k].y_pos_strand, b->olist.list[k].strong, b->olist.list[k].without_large_indel,
Get_READ_LENGTH(R_INF, b->olist.list[k].y_id));
Expand All @@ -663,7 +664,7 @@ static void worker_ovec_related_reads(void *data, long i, int tid)
{
if(b->olist.list[k].is_match != 2) continue;
fprintf(R_INF_FLAG.fp, "%.*s\n", (int)Get_NAME_LENGTH((R_INF), b->olist.list[k].y_id), Get_NAME((R_INF), b->olist.list[k].y_id));
fprintf(R_INF_FLAG.fp, "qs: %u, qe: %u, ts: %u, te: %u, rev: %u, strong: %u, no_l_indel: %u, len: %lu\n",
fprintf(R_INF_FLAG.fp, "qs: %u, qe: %u, ts: %u, te: %u, rev: %u, strong: %" PRId8 ", no_l_indel: %u, len: %lu\n",
b->olist.list[k].x_pos_s, b->olist.list[k].x_pos_e, b->olist.list[k].y_pos_s, b->olist.list[k].y_pos_e,
b->olist.list[k].y_pos_strand, b->olist.list[k].strong, b->olist.list[k].without_large_indel,
Get_READ_LENGTH(R_INF, b->olist.list[k].y_id));
Expand All @@ -675,7 +676,7 @@ static void worker_ovec_related_reads(void *data, long i, int tid)
if(b->olist.list[k].is_match == 1) continue;
if(b->olist.list[k].is_match == 2) continue;
fprintf(R_INF_FLAG.fp, "%.*s\n", (int)Get_NAME_LENGTH((R_INF), b->olist.list[k].y_id), Get_NAME((R_INF), b->olist.list[k].y_id));
fprintf(R_INF_FLAG.fp, "qs: %u, qe: %u, ts: %u, te: %u, rev: %u, strong: %u, no_l_indel: %u, len: %lu\n",
fprintf(R_INF_FLAG.fp, "qs: %u, qe: %u, ts: %u, te: %u, rev: %u, strong: %" PRId8 ", no_l_indel: %u, len: %lu\n",
b->olist.list[k].x_pos_s, b->olist.list[k].x_pos_e, b->olist.list[k].y_pos_s, b->olist.list[k].y_pos_e,
b->olist.list[k].y_pos_strand, b->olist.list[k].strong, b->olist.list[k].without_large_indel,
Get_READ_LENGTH(R_INF, b->olist.list[k].y_id));
Expand Down Expand Up @@ -1406,7 +1407,7 @@ void Output_PAF()
Get_NAME_LENGTH(R_INF, Get_qn(sources[i].buffer[j])), output_file);
fwrite("\t", 1, 1, output_file);
fprintf(output_file, "%lu\t", (unsigned long)Get_READ_LENGTH(R_INF, Get_qn(sources[i].buffer[j])));
fprintf(output_file, "%d\t", Get_qs(sources[i].buffer[j]));
fprintf(output_file, "%" PRIu32 "\t", Get_qs(sources[i].buffer[j]));
fprintf(output_file, "%d\t", Get_qe(sources[i].buffer[j]));
if(sources[i].buffer[j].rev)
{
Expand All @@ -1422,8 +1423,8 @@ void Output_PAF()
fprintf(output_file, "%lu\t", (unsigned long)Get_READ_LENGTH(R_INF, Get_tn(sources[i].buffer[j])));
fprintf(output_file, "%d\t", Get_ts(sources[i].buffer[j]));
fprintf(output_file, "%d\t", Get_te(sources[i].buffer[j]));
fprintf(output_file, "%d\t", sources[i].buffer[j].ml);
fprintf(output_file, "%d\t", sources[i].buffer[j].bl);
fprintf(output_file, "%" PRIu32 "\t", sources[i].buffer[j].ml);
fprintf(output_file, "%" PRIu32 "\t", sources[i].buffer[j].bl);
fprintf(output_file, "255\n");

}
Expand Down