A web application containing bioinformatics tools for processing viral NGS data. https://primer-id.org
This repo adds an interface and means of processing for the pipelines below:
https://github.com/ViralSeq/viral_seq
http://github.com/clarkmu/ogv-dating
OGV forked from: http://github.com/veg/ogv-dating
package.json for setting up web application
HPC/docker.sh for docker container setup
Crons are not setup in docker container , run ogv.php and tcs-dr.php manually when there is a submission to process
HPC/locations.example.php Rename to locations.php and set location variables
