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@clatworthylab

Clatworthy Lab

Professor Menna Clatworthy lab is focused on human tissue immunity. The lab houses the Cambridge Tissue Immunity Laboratory (C-TIL).

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  1. dandelion dandelion Public

    Forked from zktuong/dandelion

    dandelion - A single cell BCR-seq analysis package for 10X Chromium 5' data

    Jupyter Notebook 5 1

  2. COVID_analysis COVID_analysis Public

    scRNAseq analyses for SARS-CoV-2 infection (COVID-19)

  3. cram2fastq cram2fastq Public

    Converting crams to fastq from irods

    Python 1

  4. ktplots ktplots Public

    Forked from zktuong/ktplots

    Some tools for plotting single-cell data

    R 1 1

  5. bulkBCRseq bulkBCRseq Public

    Bulk BCR seq processing pipeline. Reimplementation of original package provided by Dr. Rachael Bashford-Rogers (Oxford)

    Python 1

Repositories

Showing 10 of 16 repositories
  • rhostral_rhinal_hub_scrnaseq Public

    notebooks for the scrnaseq analysis to accompany Fitzpatrick 2023

    clatworthylab/rhostral_rhinal_hub_scrnaseq’s past year of commit activity
    0 0 0 0 Updated Jan 23, 2024
  • clatworthylab.github.io Public Forked from LeNPaul/Millennial

    Lab website for Clatworthy Lab using a minimalist Jekyll theme (Millenial)

    clatworthylab/clatworthylab.github.io’s past year of commit activity
    CSS 0 MIT 882 0 0 Updated Apr 17, 2023
  • dandelion Public Forked from zktuong/dandelion

    dandelion - A single cell BCR-seq analysis package for 10X Chromium 5' data

    clatworthylab/dandelion’s past year of commit activity
    Jupyter Notebook 5 AGPL-3.0 24 0 0 Updated Apr 13, 2023
  • kttools Public Forked from tuonglab/kttools

    Kelvin's python tool module

    clatworthylab/kttools’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Apr 12, 2023
  • cram2fastq Public

    Converting crams to fastq from irods

    clatworthylab/cram2fastq’s past year of commit activity
    Python 1 0 0 0 Updated Mar 9, 2023
  • clatworthylab_genesets Public

    Gene sets frequently used in Clatworthy lab.

    clatworthylab/clatworthylab_genesets’s past year of commit activity
    0 1 0 0 Updated Nov 10, 2022
  • bulkBCRseq Public

    Bulk BCR seq processing pipeline. Reimplementation of original package provided by Dr. Rachael Bashford-Rogers (Oxford)

    clatworthylab/bulkBCRseq’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Sep 28, 2022
  • ktplots Public Forked from zktuong/ktplots

    Some tools for plotting single-cell data

    clatworthylab/ktplots’s past year of commit activity
    R 1 MIT 30 0 0 Updated Sep 18, 2022
  • COVID_analysis Public

    scRNAseq analyses for SARS-CoV-2 infection (COVID-19)

    clatworthylab/COVID_analysis’s past year of commit activity
    0 0 0 0 Updated Sep 1, 2022
  • tools Public Forked from os334/tools
    clatworthylab/tools’s past year of commit activity
    Python 0 1 0 0 Updated Jan 18, 2022
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