Skip to content

Issues: connor-lab/ncov2019-artic-nf

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

24 Open 29 Closed
24 Open 29 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Executions fails because Nextflow preview function is deprecated
#134 opened Mar 10, 2024 by alethomas
SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly
#119 opened Mar 7, 2022 by thomasbtf
A new release for this pipeline ?
#117 opened Feb 23, 2022 by valentinelsra
2
Pin pip version in environment.yml
#116 opened Feb 1, 2022 by MattBashton
readgroup not found in provided primer scheme (1) for V4 scheme
#111 opened Aug 5, 2021 by esha-joshi
5
GFF included repo doesn't include ORF1ab frameshift
#110 opened Jun 28, 2021 by tnguyensanger
New protocolo Nanopore V1200
#105 opened May 31, 2021 by ghost
Unparseable date error
#104 opened May 6, 2021 by wtmatlock
1
variants with low SupportFraction change the sequence
#103 opened May 3, 2021 by paraslonic
Snakemake file
#102 opened Apr 30, 2021 by ksw9
1
Nanopore-conda-environment.yaml update
#97 opened Mar 29, 2021 by tarah28
Failed samples
#96 opened Feb 18, 2021 by gdauria
docker profile not working
#95 opened Feb 8, 2021 by rrdavis77
3
Access to undefined parameter 'gff'
#94 opened Jan 29, 2021 by hodeco
2
Frameshift variants may interfere with typing in type_vcf.py, even with low ALT_FREQ
#92 opened Jan 16, 2021 by dfornika
7
Make QC cutoffs configurable, but with sensible defaults
#89 opened Jan 14, 2021 by m-bull
Add --force-no-qc flag
#88 opened Jan 14, 2021 by m-bull
Sample names inherit part of illumina's nomenclature for index and lane
#87 opened Jan 14, 2021 by MattBashton
Error: prepareReferenceFiles
#86 opened Dec 26, 2020 by yockping
4
Update documentation
#85 opened Dec 24, 2020 by m-bull
Add variant count for each gene to qc.csv
#84 opened Dec 24, 2020 by m-bull
Check for nanoporeBarcodeDirs doesn't work for S3 path
#36 opened Apr 23, 2020 by lch14forever
3
Maintain changelog and have tags
#17 opened Apr 6, 2020 by sb10
2
Licensing and attribution stuff missing
#2 opened Mar 25, 2020 by tcutts
ProTip! Mix and match filters to narrow down what you’re looking for.