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Slurmkit copy n paste #140

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wants to merge 14 commits into from
Closed

Slurmkit copy n paste #140

wants to merge 14 commits into from

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edyoshikun
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Example slurm script that I use for copy pasting and cropping data.

@edyoshikun
fixing the t_idx issue that should enumerate
abf4970
@edyoshikun
shouldve used zip instad of itertools.product
550b4b7
@edyoshikun
make estimate affine show the registration.
7bb84e1
@edyoshikun
adding similarity transform as an option to do (xyx scale,rot,translate)
d85d720
@edyoshikun
Merge branch 'main' of github.com:czbiohub/mantis into fix_apply_affine
c7cc38c
@edyoshikun
reverting utils to main
0397bd1
@edyoshikun
re-adding the t_idx_out
d73be7d
@edyoshikun
fixing case when dataset is 2D
db033d6 
updating docstring for CLI using similarity vs euclidian
@edyoshikun
fixing bug in lir box calculation. Used the wrong axis.
1e919bb
@edyoshikun
adding a fix to when we provide a list of time_indeces to process.
6ca5069
@edyoshikun
replacing itertool.product with zip
d54394f
@edyoshikun
Merge branch 'main' of github.com:czbiohub/mantis into fix_apply_affine
445bfd2
@edyoshikun
copy_n_paste demo
7dc17ba
@edyoshikun
demo with filepaths
ef9f11d
@edyoshikun edyoshikun marked this pull request as draft June 10, 2024 21:57
@edyoshikun edyoshikun changed the base branch from main to fix_apply_affine June 10, 2024 21:59
@ieivanov ieivanov mentioned this pull request Jul 1, 2024
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@edyoshikun edyoshikun requested review from ieivanov and removed request for ieivanov July 2, 2024 22:27
@edyoshikun
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Check #145 . This function might be more useful.

@talonchandler talonchandler deleted the branch fix_apply_affine July 11, 2024 22:35
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@edyoshikun @talonchandler