Trial dyn [email protected]@main

[Melkiades]

What changes are proposed in this pull request?
Integrate table printouts within example sections by leveraging raw html and decoupled file writing and reading.

If there is an GitHub issue associated with this pull request, please provide link.

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Reviewer Checklist (if item does not apply, mark is as complete)

• Ensure all package dependencies are installed by running renv::install()
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• If a new function was added, function included in _pkgdown.yml
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When the branch is ready to be merged into master:

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• Run codemetar::write_codemeta()
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• Approve Pull Request
• Merge the PR. Please use "Squash and merge".

[Melkiades]

Now it should pass the tests but we have two remaining issues in the printout: 1. After the first html any markdown used is lost (like if you use a italic text it will not be italic but there will be _). 2. The background follows the colorscheme of rstudio. I honestly do not know how to solve these issues.

[ddsjoberg]

Regarding the color. Perhaps we can make it a part of our print method to make the background white?
https://gt.rstudio.com/reference/tab_style.html

The markdown bit is confusing. What if we added gt::fmt_markdown(everything()) to our print method? Does that solve it?

[Melkiades]

gt::fmt_markdown(everything())

I tried both. The second does make the text invisible while the first one got me here

The generating table is the following (with the enforced setting):

  trial |>
    select(age, grade, response, trt) |>
    tbl_summary(
      by = trt,
      label = list(age = "Patient Age"),
      statistic = list(all_continuous() ~ "{mean} ({sd})"),
      digits = list(age = c(0, 1))
    ) |>
    as_gt() |>
    gt::tab_options() |>
    gt::tab_style(
      style = list(
        gt::cell_fill(color = "white"),
        gt::cell_text(color = "black"),
        gt::cell_borders(color = "lightgrey", sides = c("top", "bottom"))
      ),
      locations = gt::cells_body()
    ) 

The lightgrey is not respected. See the following from viewer

I have the feeling that these two are bugs/unexpected behavior from roxygen2

[ddsjoberg]

Let's put this on hold until we're further along with the unit testing. this is a lovely to have, and the unit tests are a must-have