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deLaatLab

GitHub page de Laat lab

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  1. pipe4C pipe4C Public

    4C-seq processing pipeline

    R 20 17

  2. MG-NIPD MG-NIPD Public

    Non-invasive prenatal diagnostics for monogenic diseases

    R 5 3

  3. peakHiC peakHiC Public

    peakHiC method to identify 3D chromatin interactions (loops) from HiC data

    R 3 1

  4. mc4c_py mc4c_py Public

    Forked from UMCUGenetics/pymc4c

    A python based approach to processing MC4C data

    Python 2

  5. PLIER PLIER Public

    Detecting chromosomal rearrangements from targeted proximity-ligation data

    Python 2 1

  6. peakHiC_trackHub peakHiC_trackHub Public

    peakHiC V4C bigWig tracks for import into e.g. UCSC genome browser

    1

Repositories

Showing 9 of 9 repositories
  • pipe4C Public

    4C-seq processing pipeline

    deLaatLab/pipe4C’s past year of commit activity
    R 20 17 0 0 Updated Apr 17, 2024
  • triplix Public

    An interface and processing pipeline for multi-contact spatial genomics data

    deLaatLab/triplix’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 7, 2023
  • PLIER Public

    Detecting chromosomal rearrangements from targeted proximity-ligation data

    deLaatLab/PLIER’s past year of commit activity
    Python 2 1 0 0 Updated Mar 6, 2023
  • PCNA-NAQ-seq Public
    deLaatLab/PCNA-NAQ-seq’s past year of commit activity
    R 0 0 0 0 Updated Jul 12, 2022
  • peakHiC Public

    peakHiC method to identify 3D chromatin interactions (loops) from HiC data

    deLaatLab/peakHiC’s past year of commit activity
    R 3 1 2 0 Updated May 31, 2021
  • mc4c_py Public Forked from UMCUGenetics/pymc4c

    A python based approach to processing MC4C data

    deLaatLab/mc4c_py’s past year of commit activity
    Python 2 2 0 0 Updated Mar 19, 2020
  • peakHiC_trackHub Public

    peakHiC V4C bigWig tracks for import into e.g. UCSC genome browser

    deLaatLab/peakHiC_trackHub’s past year of commit activity
    1 0 0 0 Updated Jan 9, 2020
  • mc4c_test-data Public

    This is a reduced MC-4C dataset provided to be used as a test case for running MC-4C pipeline. The MC-4C pipeline can be freely downloaded from: https://github.com/deLaatLab/mc4c_py

    deLaatLab/mc4c_test-data’s past year of commit activity
    0 0 0 0 Updated May 27, 2019
  • MG-NIPD Public

    Non-invasive prenatal diagnostics for monogenic diseases

    deLaatLab/MG-NIPD’s past year of commit activity
    R 5 3 2 0 Updated Nov 2, 2018

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