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remove more URLs to avoid CRAN errors
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dfsp-spirit committed Sep 21, 2020
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4 changes: 2 additions & 2 deletions R/gifti_writer.R
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#'
#' @param data_array list of data vectors and/or data matrices.
#'
#' @param intent vector of NIFTI intent strings for the data vectors in 'data_array' parameter, see \code{\link[gifti]{convert_intent}}. Example: 'NIFTI_INTENT_SHAPE'. See \url{https://nifti.nimh.nih.gov/nifti-1/documentation/nifti1fields/nifti1fields_pages/group__NIFTI1__INTENT__CODES.html}.
#' @param intent vector of NIFTI intent strings for the data vectors in 'data_array' parameter, see \code{\link[gifti]{convert_intent}}. Example: 'NIFTI_INTENT_SHAPE'. See https://nifti.nimh.nih.gov/nifti-1/documentation/nifti1fields/nifti1fields_pages/group__NIFTI1__INTENT__CODES.html.
#'
#' @param datatype vector of NIFTI datatype strings. Example: 'NIFTI_TYPE_FLOAT32'. Should be suitable for your data.
#'
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#'
#' @return xml tree, see xml2 package. One could modify this tree as needed using xml2 functions, e.g., add metadata.
#'
#' @references \url{https://www.nitrc.org/frs/download.php/2871/GIFTI_Surface_Format.pdf}
#' @references See https://www.nitrc.org/frs/download.php/2871/GIFTI_Surface_Format.pdf
#'
#' @note Unless you want to modify the returned tree manually, you should not need to call this function. Use \code{\link{gifti_writer}} instead.
#'
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2 changes: 1 addition & 1 deletion R/nifti_to_mgh.R
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#'
#' @note This is not supposed to be used to read 1D morphometry data from NIFTI files generated by FreeSurfer (e.g., by converting `lh.thickness` to NIFTI using `mri_convert`): the FreeSurfer NIFTI hack is not supported by oro.nifti.
#'
#' @references \href{https://nifti.nimh.nih.gov/nifti-1/}{NIfTI-1 data format spec}
#' @references See https://nifti.nimh.nih.gov/nifti-1/ for the NIfTI-1 data format spec.
#'
#' @examples
#' \dontrun{
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