scrabbitR

An R package containing utility functions used as part of the Ton et al. 2022¹ paper exploring rabbit development with single-cell transcriptomics.

Rabbit Development as a Model for Single Cell Comparative Genomics

Mai-Linh Ton^1,2,* Daniel Keitley^3,*, Bart Theeuwes², Carolina Guibentif⁴, Jonas Ahnfelt-Rønne⁵, Thomas Kjærgaard Andreassen⁵, Fernando J. Calero-Nieto², Ivan Imaz-Rosshandler⁶, Blanca Pijuan-Sala⁷, Jennifer Nichols², Èlia Benito-Gutiérrez³, John Marioni^7,8,9, Berthold Göttgens^1,2

doi: https://doi.org/10.1101/2022.10.06.510971

See project webpage here for more info.

Installation

We recommend installing within a conda environment. The environment originally used in our analysis can be found here.

# Inside R session
devtools::install_github("https://github.com/dkeitley/scrabbitr")

Example usage

Comparing neighbourhoods across rabbit and mouse - link

Links

Project webpage
Project github repository
scrabbitpy