The code in this directory performs some exemplar analysis used in Gava, G.P. et al. Integrating new memories into the hippocampal network activity space. Nat Neurosci 24, 326–330 (2021).
The Jupyter notebook cofiringTopology.ipynb extracts the network parameters shown in Fig. 1 and Extended Data Fig. 2 of the paper (i.e. strength, clustering coefficient ad geodesic path length) of one exemplar pre-computed co-firing graph per experiment type (i.e. CPP, SPP, novel only and familiar reward). These data are stored in /data/networks.
In the notebook also the topological distance across co-firing graphs is computed and visualised (Fig. 2).
11/2022
The notebook has been expanded to perform some basic analyses on one exemplar ephys recording from the CPP protocol (mhb10-161111, located in /data/recday).
These extra analyses were added for the MAIN Educational 2022 workshop (9-10/12/2022, Montreal, CA).
A Colab notebook version is also available here.
The slides prepared for the MAIN Educational 2022 workshop can be found here.
The data shared here is copyright to the University of Oxford.