Skip to content
View erinyoung's full-sized avatar
56 followers · 299 following

Achievements

Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: YOLOAchievement: QuickdrawAchievement: StarstruckAchievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Organizations

@UPHL-BioNGS
Block or Report

Block or report erinyoung

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
erinyoung/README.md

Greetings!

I work at the Utah Public Health Laboratory as a Bioinformatician.

I mostly work in the linux (centos and ubuntu) command line (shell).

I have written a few packages in python, but mostly I cobble bioinformatic tools together into nextflow workflows.

I'd like to learn rust, but haven't found the time.

I'm almost always open for collaboration.

Pinned Loading

  1. StaPH-B/docker-builds StaPH-B/docker-builds Public

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile 176 116

  2. roundabout roundabout Public

    Finding regions of similarity between plasmids

    Nextflow 14

  3. UPHL-BioNGS/Cecret UPHL-BioNGS/Cecret Public

    Reference-based consensus creation

    Nextflow 44 22

  4. UPHL-BioNGS/Grandeur UPHL-BioNGS/Grandeur Public

    UPHL's Reference Free Pipeline

    Nextflow 23 5

  5. UPHL-BioNGS/Donut_Falls UPHL-BioNGS/Donut_Falls Public

    Basic workflow for nanopore sequencing data

    Nextflow 14 1

  6. ACI ACI Public

    Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.

    Python 3