genomics_shortcuts

This folder is where I share my tricks and tools for applied bioinformatics

classify_vcf_from_igv.py

This tool parses a VCF file, shows each variant one by one on IGV and displays an interface allowing to classify each variant. New VCF files can be exported according to the classifications selected.
Video demo:
https://www.youtube.com/watch?v=U-eH46hVKnM

gleaves_to_external_resources.xlsm

This unofficial tool is used for variant interpretation on the Gleaves variant interface from Seqoia lab in France. It generates links to variant and gene resources from the clipboard.
Video demo:
https://www.youtube.com/watch?v=nCqUt54V838