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@galosh

Genome Analytics Lab of SCHARP at the Hutch

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  1. profillic-hmmer profillic-hmmer Public

    Modified versions of HMMER 3 programs to implement interoperability with galosh profiles (as generated by profillic).

    C++ 2 3

  2. prolific prolific Public

    A library of useful C++ classes for working with genomic sequence data and Profile HMMs.

    C++ 1

  3. profuse profuse Public

    A suite of programs for working with Profile HMMs.

    C++ 1

  4. profillic profillic Public

    A suite of programs for estimating parameters of Profile HMMs using Baum-Welch, Conditional Baum-Welch, and both Unconditional and Conditional Quadratic Ascent.

    C++ 1

  5. profillic-attic profillic-attic Public

    Some code fitting into the prolific/profuse/profillic suite, but not yet ready for primetime

    C++

Repositories

Showing 5 of 5 repositories
  • profillic Public

    A suite of programs for estimating parameters of Profile HMMs using Baum-Welch, Conditional Baum-Welch, and both Unconditional and Conditional Quadratic Ascent.

    galosh/profillic’s past year of commit activity
    C++ 1 GPL-2.0 0 3 0 Updated Nov 5, 2015
  • profuse Public

    A suite of programs for working with Profile HMMs.

    galosh/profuse’s past year of commit activity
    C++ 1 GPL-2.0 0 2 0 Updated Nov 5, 2015
  • prolific Public

    A library of useful C++ classes for working with genomic sequence data and Profile HMMs.

    galosh/prolific’s past year of commit activity
    C++ 1 GPL-2.0 0 0 0 Updated Nov 5, 2015
  • profillic-attic Public

    Some code fitting into the prolific/profuse/profillic suite, but not yet ready for primetime

    galosh/profillic-attic’s past year of commit activity
    C++ 0 GPL-2.0 0 0 0 Updated Oct 23, 2015
  • profillic-hmmer Public

    Modified versions of HMMER 3 programs to implement interoperability with galosh profiles (as generated by profillic).

    galosh/profillic-hmmer’s past year of commit activity
    C++ 2 GPL-3.0 3 6 0 Updated Mar 20, 2013

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