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@getwilds

Fred Hutch Data Science Lab WILDS

The new home of the DaSL WILDS (Workflows for Integration of Large Data and Software)
README.md

Welcome to the Fred Hutch Cancer Center Data Science Lab's open source software resource, getwilds (get Workflows Integrating Large Data and Software). We hope you like it here.

See our emerging website at getwilds.org and stay tuned for more as we get this effort off the ground!

Find out more about the Data Science Lab at hutchdatascience.org

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  1. sixtyfour sixtyfour Public

    🚚 CEO, entrepreneur

    R 9 1

  2. cancerprof cancerprof Public

    API Client for State Cancer Profiles

    R 2 3

  3. wilds-docker-library wilds-docker-library Public

    Central location for all Docker containers associated with WILDS workflows

    Dockerfile 2 1

Repositories

Showing 10 of 23 repositories
  • registry Public

    WILDS Repo Registry

    getwilds/registry’s past year of commit activity
    Python 0 0 0 0 Updated Jul 4, 2024
  • ww-sra-star Public

    Workflow to download paired fastqs from SRA and pass through STAR 2 pass

    getwilds/ww-sra-star’s past year of commit activity
    WDL 0 MIT 0 1 1 Updated Jul 4, 2024
  • ww-cell-ranger Public

    A basic starting point for a cell ranger workflow

    getwilds/ww-cell-ranger’s past year of commit activity
    WDL 0 MIT 0 1 1 Updated Jul 4, 2024
  • cancerprof Public

    API Client for State Cancer Profiles

    getwilds/cancerprof’s past year of commit activity
    R 2 3 11 0 Updated Jul 3, 2024
  • ww-star-deseq2 Public

    A demo repo to help folks run Star on RNA seq data and do DEseq2

    getwilds/ww-star-deseq2’s past year of commit activity
    WDL 0 MIT 0 1 1 Updated Jul 3, 2024
  • ww-fastq-to-cram Public

    Self-contained WDL workflow that converts a WGS FASTQ file into an unmapped CRAM file

    getwilds/ww-fastq-to-cram’s past year of commit activity
    WDL 0 MIT 1 1 1 Updated Jul 3, 2024
  • ww-vc-trio Public

    Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them

    getwilds/ww-vc-trio’s past year of commit activity
    WDL 1 MIT 2 1 1 Updated Jul 3, 2024
  • ww-test-workflows Public Forked from FredHutch/wdl-test-workflows

    A repo containing workflows written in WDL to test using the Fred Hutch Cromwell configuration.

    getwilds/ww-test-workflows’s past year of commit activity
    WDL 0 MIT 1 1 1 Updated Jul 3, 2024
  • proof Public
    getwilds/proof’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 3, 2024
  • getwilds.github.io Public

    WILDS Website

    getwilds/getwilds.github.io’s past year of commit activity
    Lua 0 CC0-1.0 0 6 1 Updated Jul 2, 2024
View all repositories

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