ww-star-deseq2-inputs.json

{
  "STAR2Pass.batch_file": "input_manifest.tsv",
  "STAR2Pass.ref_genome": "GRCh38.gencode.v31",
  "STAR2Pass.star_genome_tar": "path_to_reference_tarfile/STAR2.7.1_genomeGRCh38.gencode.v31.tgz",
  "STAR2Pass.rnaseqc_genes_gtf": "path_to_ref_gtf/gencode.v31.genes.gtf"
}