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  1. hoelzer-lab/rnaflow hoelzer-lab/rnaflow Public

    A simple RNA-Seq differential gene expression pipeline using Nextflow

    HTML 91 19

  2. mgnify-lr mgnify-lr Public

    Evaluation of long-read support for the MGnify pipeline

    Nextflow 6 5

  3. hoelzer-lab/treat hoelzer-lab/treat Public

    A nextflow pipeline for the evaluation de novo transcriptome assemblies: TranscRiptome EvaluATion (TREAT).

    Nextflow 2

  4. rki-mf1/clean rki-mf1/clean Public

    A nextflow pipeline for decontamination of short reads, long reads and contigs

    Nextflow 27 2

  5. nanovirus nanovirus Public

    A nextflow implementation of the assembly-free detection of viruses from nanopore data

    Nextflow 2 1

  6. hoelzer-lab/ribap hoelzer-lab/ribap Public

    A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs

    HTML 20 3