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apm-cnv

The cnvkit and ichorcna pipelines for cfDNA

Postprocessing of canary, cnvkit, ichorcna and wisecondor results for cfDNA

Apply necessary formating to wisecondor results

for i in wisecondor/testSamples/Sample_HSTAMP*-T1_Tumor.sorted.samtools-deduped.sorted.offtarget.txt; do python3 wisecondorFormatter.py $i; done