2-state HMM for locating G-C Content

Requirements to Download

pip install -r requirements.txt 

Data

Genome of Methanocaldococcus jannaschii web URL: https://www.ncbi.nlm.nih.gov/genome/?term=Methanocaldococcus+jannaschii

How to run

To run the training for HMM, run:

python src/train.py -fi data/GCF_000091665.1_ASM9166v1_genomic.fna -fo output/output.txt -gt data/GCF_000091665.1_ASM9166v1_genomic.gff