Rscripts on sc-rnaseq, rnaseq, TPM normalization, and manuscript plots for the Bioinformatics project titled: Deconvolution of Cell Types from Bulk Gene Expression Profiling in a Non-alcoholic Steatohepatitis Model of Mice Liver Reveals Global Changes in Fibrosis and Immune Response Pathways
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This project involves the Deconvolution (Digital flow-cytometry) of mice whole liver. ScRNA-Seq analysis was performed using Seurat R package, RNA-Seq pipeline was performed with HISAT2 (Alignment), HTSEQ (read count). Data normalization was performed, and the data was uploaded to CIBERSORTx to perform deconvolution analysis to identify the diff…
kiteomoru/Deconvolution-analysis-of-Mouse-Liver-Cell-Types
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This project involves the Deconvolution (Digital flow-cytometry) of mice whole liver. ScRNA-Seq analysis was performed using Seurat R package, RNA-Seq pipeline was performed with HISAT2 (Alignment), HTSEQ (read count). Data normalization was performed, and the data was uploaded to CIBERSORTx to perform deconvolution analysis to identify the diff…
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