nnunetdocker

Usage:

Build container with bash build.sh
Run with docker run --rm --gpus <all,0,1,...> -v /path/to/input/images:/in -v /path/to/output/segmentations:/out nnimage-gpu

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
Dockerfile		Dockerfile
README.md		README.md
build.sh		build.sh
convert_to_RTSTRUCT.py		convert_to_RTSTRUCT.py
convert_to_nifti.py		convert_to_nifti.py
nnUNet-cpu.yaml		nnUNet-cpu.yaml
nnUNet.yaml		nnUNet.yaml
nnUNetDicom.yaml		nnUNetDicom.yaml
pipeline.sh		pipeline.sh
post_process_segmentation.py		post_process_segmentation.py
run_segmentation.sh		run_segmentation.sh
slice.py		slice.py

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