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lamanno-epfl

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  1. velocycle velocycle Public

    Bayesian model for RNA velocity estimation of periodic manifolds

    Jupyter Notebook 14 1

  2. tomographer tomographer Public

    The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7

    Jupyter Notebook 11 3

  3. uMAIA uMAIA Public

    Toolbox for the processing and analysis of MALDI-MSI data

    Jupyter Notebook 6

  4. rpe_differentiation_profiling_code rpe_differentiation_profiling_code Public

    Custom code to accompany methods of hESC-RPE differentiation study

    HTML 5 1

  5. rgl3_signaling_dopaminergic_analysis rgl3_signaling_dopaminergic_analysis Public

    Code for the CellChat signalling analysis of the developing dopaminergic niche accompanying the paper "Transcriptomics and functional analysis define Midbrain Floorplate Radial glia-1 and -3 as dop…

    Jupyter Notebook 2

  6. capolupo2021 capolupo2021 Public

    Notebooks and analysis of the manuscript Capolupo et al. 2021

    Jupyter Notebook 1

Repositories

Showing 6 of 6 repositories
  • velocycle Public

    Bayesian model for RNA velocity estimation of periodic manifolds

    lamanno-epfl/velocycle’s past year of commit activity
    Jupyter Notebook 14 1 0 0 Updated Jun 25, 2024
  • uMAIA Public

    Toolbox for the processing and analysis of MALDI-MSI data

    lamanno-epfl/uMAIA’s past year of commit activity
    Jupyter Notebook 6 0 0 0 Updated May 14, 2024
  • rgl3_signaling_dopaminergic_analysis Public

    Code for the CellChat signalling analysis of the developing dopaminergic niche accompanying the paper "Transcriptomics and functional analysis define Midbrain Floorplate Radial glia-1 and -3 as dopaminergic progenitors or signaling niche cells, respectively"

    lamanno-epfl/rgl3_signaling_dopaminergic_analysis’s past year of commit activity
    Jupyter Notebook 2 BSD-2-Clause 0 0 0 Updated Jan 31, 2024
  • rpe_differentiation_profiling_code Public

    Custom code to accompany methods of hESC-RPE differentiation study

    lamanno-epfl/rpe_differentiation_profiling_code’s past year of commit activity
    HTML 5 BSD-2-Clause 1 0 0 Updated Dec 22, 2021
  • tomographer Public

    The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7

    lamanno-epfl/tomographer’s past year of commit activity
    Jupyter Notebook 11 BSD-2-Clause 3 1 0 Updated May 15, 2021
  • capolupo2021 Public

    Notebooks and analysis of the manuscript Capolupo et al. 2021

    lamanno-epfl/capolupo2021’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 15, 2021

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