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Add minimap2 submodule #17

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Add minimap2 submodule #17

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3 changes: 3 additions & 0 deletions .gitmodules
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Original file line number Diff line number Diff line change
Expand Up @@ -22,3 +22,6 @@
[submodule "hapdip"]
path = hapdip
url = https://github.com/lh3/hapdip
[submodule "minimap2"]
path = minimap2
url = https://github.com/lh3/minimap2
7 changes: 5 additions & 2 deletions Makefile
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
SUBDIRS=bfc bwa fermi2 htsbox ropebwt2 seqtk trimadap
SUBDIRS=bfc bwa fermi2 htsbox minimap2 ropebwt2 seqtk trimadap

all:fermi.kit/htsbox fermi.kit/ropebwt2 fermi.kit/bfc fermi.kit/bwa fermi.kit/seqtk fermi.kit/trimadap-mt \
all:fermi.kit/htsbox fermi.kit/ropebwt2 fermi.kit/bfc fermi.kit/bwa fermi.kit/minimap2 fermi.kit/seqtk fermi.kit/trimadap-mt \
fermi.kit/fermi2 fermi.kit/fermi2.pl fermi.kit/fermi2.js fermi.kit/k8 fermi.kit/hapdip.js \
fermi.kit/run-calling

Expand All @@ -24,6 +24,9 @@ fermi.kit/bfc:prepare
fermi.kit/bwa:prepare
cp bwa/bwa $@; strip $@

fermi.kit/minimap2:prepare
cp minimap2/minimap2 $@; strip $@

fermi.kit/fermi2:prepare
cp fermi2/fermi2 $@; strip $@

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1 change: 1 addition & 0 deletions minimap2
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Submodule minimap2 added at fcac29