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Pangene-1.1 (r231)

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@lh3 lh3 released this 22 Feb 16:17
· 13 commits to main since this release

Notable changes to pangene:

  • Improvement: more aggressive pseudogene filtering. This helps the great ape
    graph.

  • New feature: added option -E to filter out genes aligned with a single exon
    in all input genomes. Graphs constructed from multi-exon genes are usually
    cleaner.

Notable changes to pangene.js:

  • Improvement (call): a new bubble finding algorithm via local graph
    traversal. Added a filter to remove falsely idenrified bubbles.

  • New feature (call): output names of assemblies that support each allele.

  • New feature: added the getaa subcommand to parse Ensembl and GenCode
    annotations.

(22 February 2024, r231)