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Code to reproduce results from Roger, E., Labache, L., et al. 2023. When Age Tips the Balance: a Dual Mechanism Affecting Hemispheric Specialization for Language. DOI: 10.1101/2023.12.04.569978

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When Age Tips the Balance: a Dual Mechanism Affecting Hemispheric Specialization for Language

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Contents


Background

Aging engenders neuroadaptations, generally reducing specificity and selectivity in functional brain responses. Our investigation delves into the functional specialization of brain hemispheres within language-related networks across adulthood. In a cohort of 728 healthy adults spanning ages 18 to 88, we modeled the trajectories of inter-hemispheric asymmetry concerning the principal functional gradient across 37 homotopic regions of interest of an extensive language network known as the Language-and-Memory Network. Our findings reveal that over two-thirds of Language-and-Memory Network homotopic regions of interest undergo asymmetry changes with age, falling into two main clusters. The first cluster evolves from left-sided specialization to right-sided tendencies, while the second cluster transitions from right-sided asymmetry to left-hemisphere dominance. These reversed asymmetry shifts manifest around midlife, occurring after age 50, and are associated with poorer language production performance. Our results provide valuable insights into the influence of functional brain asymmetries on language proficiency and present a dynamic perspective on brain plasticity during the typical aging process.


Reference

For usage of the manuscript, please cite:

  • Roger, E., Labache, L., Hamlin, N., Kruse, J., Baciu, M., & Doucet, G. E. (2023). When age tips the balance: a dual mechanisms affecting hemispheric specialization for language. BioRxiv (2023). DOI: 10.1101/2023.12.04.569978

For usage of the associated code, please also cite:

  • Labache, L., Roger, E., Hamlin, N., Kruse, J., Baciu, M., & Doucet, G. E. (2023). When age tips the balance: a dual mechanisms affecting hemispheric specialization for language. loiclabache/RogerLabache_2023_LanguAging. DOI: 10.5281/zenodo.10253278
  • The original Generalized Additive Mixed Models Code for structural MRI data: Roe, J., et al. 2021. DOI: 10.1038/s41467-021-21057-y, and related GitHub repository: AgeSym

Code Release

The Script folder includes three R scripts. The three R scripts are designed to facilitate the replication of results as detailed in the Method Section of the manuscript.

  • 1_GAMM_hROIs.R: R script to model gradient asymmetry trajectories throughout life using factor-smooth Generalized Additive Mixed Models. The script allows to compute the asymmetry trajectories underlying the interaction Hemisphere×Age and their confidence intervals. This script also assesses the significance of the smooth Hemisphere×Age interaction by testing for a difference in the smooth term of Age between hemispheres. We applied a False Discovery Rate correction to control for the number of tests conducted.
  • 2_PAM_Clustering.R: R script to classify regions in the Language-and-Memory network that demonstrate a significant Hemisphere×Age interaction, based on their functional asymmetry skewness profiles. This script also allows to compute the intersection point between the two average clusters curves.
  • 3_CCA_BrainCognitionAssociation.R: R script to proceed with the Canonical Correlation Analysis to assess brain–behavior Associations.

Note that the R scripts also contain the code to reproduce the figures found in the manuscript. The brain renderings in the paper require a customized version of Surf Ice that we will be happy to share on demand.


Atlas Used

The atlas used in the paper is available in the Atlas folder.

  • The Language-and-Memory atlas provides an atlas in standardized MNI volume space of 74 sentence- and memory-related areas (37 by hemisphere). The Language-and-Memory atlas encompasses the core regions that compose the stable components for language and memory. The Language-and-Memory atlas is composed of multiple brain regions provided by task-fMRI: one cross-sectional study for language (see Labache, L., et al. 2019, Github repository: SENSAAS) and one meta-analysis for memory (see Spaniol, J., et al. 2009). The compilation of the Language-and-Memory atlas was initially undertaken in the following paper: Roger, E., et al. 2020.
    • The file Atlas/language_memory_atlas.nii.gz contains the Volumetric Language-and-Memory atlas (in MNI ICBM 152 space).
    • Atlas/language_memory_atlas.txt: text file containing a full description of each Language-and-Memory areas. The first column Abbreviation is the abbreviation of a region. The second column Region is the full anatomical label of a region. Hemisphere refers to the cerebral hemisphere to which a region belongs (“L” for left, “R” for right). Function indicates if a regions process language (“L”), memory (“M”), or language and memory (“LM”). Index is the index of each region that is used in the NIfTI file. Number of Voxels is the number of voxels of each region for the 2mm version of the atlas. The MNI coordinate (columns Xmm, Ymm, Zmm) of each regions centroid is also provided.


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Questions

Please contact me (Loïc Labache) at: [email protected] and/or [email protected], or Élise Roger at: [email protected]

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Code to reproduce results from Roger, E., Labache, L., et al. 2023. When Age Tips the Balance: a Dual Mechanism Affecting Hemispheric Specialization for Language. DOI: 10.1101/2023.12.04.569978

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