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metagenlab

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  1. mummer2circos mummer2circos Public

    Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments

    Python 92 24

  2. zDB zDB Public

    zDB: comparative bacterial genomics made easy

    HTML 24 4

  3. MeSS MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    Python 14 2

  4. assembly_finder assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    Python 9

  5. locus2genoplotr locus2genoplotr Public

    Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram

    Python 9 1

  6. zAMP zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    R 7 4

Repositories

Showing 10 of 22 repositories
  • zDB Public

    zDB: comparative bacterial genomics made easy

    metagenlab/zDB’s past year of commit activity
    HTML 24 MIT 4 5 1 Updated Jul 5, 2024
  • zAMP Public

    zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics

    metagenlab/zAMP’s past year of commit activity
    R 7 MIT 4 9 1 Updated Jul 5, 2024
  • locus2genoplotr Public

    Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram

    metagenlab/locus2genoplotr’s past year of commit activity
    Python 9 1 1 0 Updated Jun 18, 2024
  • GENCOV Public
    metagenlab/GENCOV’s past year of commit activity
    Python 3 GPL-3.0 0 1 0 Updated Jun 18, 2024
  • diag_pipelines Public

    Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.

    metagenlab/diag_pipelines’s past year of commit activity
    Python 5 9 5 1 Updated Jun 17, 2024
  • MeSS Public

    Snakemake pipeline for simulating shotgun metagenomic samples

    metagenlab/MeSS’s past year of commit activity
    Python 14 MIT 2 2 0 Updated May 24, 2024
  • assembly_finder Public

    snakemake-powered cli to download genomes using NCBI datasets

    metagenlab/assembly_finder’s past year of commit activity
    Python 9 MIT 0 0 0 Updated May 24, 2024
  • metagenlab_libs Public
    metagenlab/metagenlab_libs’s past year of commit activity
    Python 0 0 0 1 Updated Apr 30, 2024
  • rnaseq Public

    Rnaseq pipeline

    metagenlab/rnaseq’s past year of commit activity
    Python 0 0 0 0 Updated Feb 1, 2024
  • chlamdb Public

    chlamdb.ch website code

    metagenlab/chlamdb’s past year of commit activity
    HTML 5 1 3 0 Updated Dec 29, 2023
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