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[1] ‘1.0.2’
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
[1] ‘0.8.5’
[1] ‘0.20.41’
[1] ‘1.4.0’
[1] ‘0.5.0’
Error in`$<-.data.frame`(`*tmp*`, V2, value = character(0)) :
replacement has 0 rows, data has 452064
Calls: $<- -> $<-.data.frame
Execution halted
The text was updated successfully, but these errors were encountered:
You are probably arleady aware, but just in case I think there are two differences with EzBioCloud explaining the errors:
The genus is not repeted at species levels (To be verified, but in EzBioCloud it would report: >Bacteria;Proteobacteria;Gammaproteobacteria;Pseudomonadales;Pseudomonadaceae;Pseudomonas;Pseudomonas amygdali;)
There are here a variable numbers of ranks (species sometimes missing..)
When using SILVA v138.1 (wSpecies_train_set) I get an error in Derep_and_merge_taxonomy.
Inspecting the log:
The text was updated successfully, but these errors were encountered: