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Merge pull request #446 from ncihtan/445-fix-stripe-calling-validatio…
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…n-rule

Remove stripe calling validation rule as @aditigopalan is away
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adamjtaylor authored Jul 31, 2024
2 parents 1ccbf6b + d539cb4 commit 58c0a1c
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Showing 2 changed files with 2 additions and 5 deletions.
2 changes: 1 addition & 1 deletion HTAN.model.csv
Original file line number Diff line number Diff line change
Expand Up @@ -177,7 +177,7 @@ Ligation Condition,Name of ligase and condition for proximity ligation,,,,TRUE,S
Biotin Enrichment,Whether biotin is used for enriching ligation product,"Yes, No",,,TRUE,Sequencing,,,
DNA Input Amount,"Amount of DNA for library construction, in nanograms.",,,,TRUE,Sequencing,,,int
Resolution,"Binning size used for generating contact matrix, in basepair.",,,,TRUE,Sequencing,,,
Stripe Calling,"Tool used for identifying architectural stripe-forming, interaction hotspots.","MACS2, Other",,,TRUE,Sequencing,,,list::-?\d+
Stripe Calling,"Tool used for identifying architectural stripe-forming, interaction hotspots.","MACS2, Other",,,TRUE,Sequencing,,,
Loop Window,Binning size used for calling significant dot interactions (loops),,,,TRUE,Sequencing,,,list like :: regex search -?\d+
Stripe Window,Binning size used for calling significant architectural stripes. Can be an integer or comma-separated list of integers indicating bin size and sliding window size if different.,,,,TRUE,Sequencing,,,list like :: regex search -?\d+
Loop Calling,Tool used for identifying loop interactions,"HiCCUPS, Cooltools, Other",,,TRUE,Sequencing,,,
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5 changes: 1 addition & 4 deletions HTAN.model.jsonld
Original file line number Diff line number Diff line change
Expand Up @@ -46687,10 +46687,7 @@
],
"sms:displayName": "Stripe Calling",
"sms:required": "sms:true",
"sms:validationRules": [
"list",
"-?\\d+"
]
"sms:validationRules": []
},
{
"@id": "bts:LoopWindow",
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