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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 81 7

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 14 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 20 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 13

Repositories

Showing 10 of 46 repositories
  • movement Public

    Python tools for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 81 BSD-3-Clause 7 61 (1 issue needs help) 9 Updated Jul 17, 2024
  • HowTo Public

    NIU website on common software problems and their troubleshooting

    neuroinformatics-unit/HowTo’s past year of commit activity
    9 CC-BY-4.0 1 11 1 Updated Jul 16, 2024
  • spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 13 BSD-3-Clause 0 23 3 Updated Jul 15, 2024
  • rsp-vision Public

    Analysis and visualization of calcium imaging data from retrosplenial cortex

    neuroinformatics-unit/rsp-vision’s past year of commit activity
    Python 6 BSD-3-Clause 0 23 1 Updated Jul 15, 2024
  • In2Research-2024 Public

    Repository used as a playground for the In2Research placement we hosted in summer 2024.

    neuroinformatics-unit/In2Research-2024’s past year of commit activity
    2 0 5 0 Updated Jul 15, 2024
  • neuroinformatics-unit.github.io Public

    Home website of the Neuroinformatics Unit

    neuroinformatics-unit/neuroinformatics-unit.github.io’s past year of commit activity
    7 BSD-3-Clause 0 8 0 Updated Jul 15, 2024
  • course-software-good-practice Public

    Slides for NIU collaborative coding and software development good practices

    neuroinformatics-unit/course-software-good-practice’s past year of commit activity
    SCSS 6 BSD-3-Clause 0 1 0 Updated Jul 14, 2024
  • software-practice-template Public template

    A template to generate repositories used to teach SE best practices

    neuroinformatics-unit/software-practice-template’s past year of commit activity
    Python 6 BSD-3-Clause 0 0 0 Updated Jul 13, 2024
  • NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    neuroinformatics-unit/NeuroBlueprint’s past year of commit activity
    17 CC-BY-4.0 1 9 1 Updated Jul 11, 2024
  • actions Public

    Re-usable GitHub Action scripts

    neuroinformatics-unit/actions’s past year of commit activity
    10 MIT 3 2 1 Updated Jul 10, 2024
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