fix for bug #101 where qCount is None not 0

nextgenusfs · Oct 18, 2023 · 7afb042 · 7afb042
1 parent 1eb9631
commit 7afb042
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/amptk/amptklib.py b/amptk/amptklib.py
@@ -1446,6 +1446,8 @@ def validateorientation(tmp, reads, otus, output):
             cols = line.split('\t')
             if cols[2] == '-':
                 qCount = OTUCounts.get(cols[0])
+                if qCount is None:
+                    qCount = 0
                 tCount = OTUCounts.get(cols[1])
                 if qCount > tCount:
                     if not cols[1] in orient_remove and not cols[1] in keeper: