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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect ARCitect Public

    Cross-plattform app to create and manage ARCs.

    Vue 9 5

  2. DataHUB DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 1 3

  3. ARC-specification ARC-specification Public

    11 12

  4. Swate Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 30 6

  5. ARCtrl ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 10 6

  6. dataplan dataplan Public

    DataPLAN is the Data Management Plan (DMP) generator developed in DataPLANT

    HTML 1 3

Repositories

Showing 10 of 80 repositories
  • ARCCommander Public

    Tool to manage your ARCs

    nfdi4plants/ARCCommander’s past year of commit activity
    F# 10 MIT 9 17 0 Updated Jul 8, 2024
  • ARCtrl Public

    Library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    nfdi4plants/ARCtrl’s past year of commit activity
    F# 10 MIT 6 37 2 Updated Jul 8, 2024
  • BOAT-Builder-for-Ontology-ARC-Templates Public

    This tool/website is for a user friendly creating of an ARC template (essay or study) out of your free text protocols with self-annotated ontology labeled terms. These templates can be used in your ARC afterwards.

    nfdi4plants/BOAT-Builder-for-Ontology-ARC-Templates’s past year of commit activity
    F# 2 0 5 0 Updated Jul 8, 2024
  • Swate-templates Public

    A collection of templates for Swate (https://github.com/nfdi4plants/Swate).

    nfdi4plants/Swate-templates’s past year of commit activity
    F# 4 16 9 1 Updated Jul 8, 2024
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    nfdi4plants/Swate’s past year of commit activity
    F# 30 MIT 6 36 0 Updated Jul 8, 2024
  • nfdi4plants/arc-cwl-ro-crate-profile’s past year of commit activity
    0 MIT 0 1 1 Updated Jul 8, 2024
  • nfdi4plants/ARC-specification’s past year of commit activity
    11 12 13 2 Updated Jul 8, 2024
  • ARCtrl.NET Public

    This library contains reader functions to interact with the different formats present in an ARC

    nfdi4plants/ARCtrl.NET’s past year of commit activity
    F# 3 MIT 1 3 1 Updated Jul 7, 2024
  • DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    nfdi4plants/DataHUB’s past year of commit activity
    Shell 1 MIT 3 12 0 Updated Jul 5, 2024
  • nfdi4plants/arc-datamap-ro-crate-profile’s past year of commit activity
    0 MIT 0 0 0 Updated Jul 5, 2024