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@databio @uvasomrc @uvarc @UVADS
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nmagee/README.md

Hi there 👋

I teach systems at the University of Virginia's School of Data Science. This means tools, platforms and infrastructure — containers, cloud, Kubernetes, HPC, GPUs — as well as a variety of databases and managed services. My work centers on designing and building systems in support of computational research, focusing heavily on containers, CI/CD, and automation/orchestration for bioinformatic, genomic, and other research workflows.

Here are some courses I have taught or am designing:

  • DS1002 Programming for Data Science (DS minor)
  • DS2002 Data Science Systems (DS minor)
  • DS2022 Systems I - Introduction to Computing (new, BSDS major)
  • DS3022 Systems II - Advanced Data Systems (new, BSDS major)
  • DS4523 Advanced Topics in Systems (new, BSDS major)
  • CS4740 Cloud Computing (CS major)

Things that interest me lately:

More information:

Pinned Loading

  1. UVADS/git-basics UVADS/git-basics Public

    Set up, configure, and work with source control tools.

    SCSS 1

  2. ds2002-course ds2002-course Public

    Forked from ds3002/course

    Course material for DS2002 Data Science Systems I

    Python 1 62

  3. aws-snippets aws-snippets Public

    Sample CloudFormation templates for class.

    Python 1

  4. boto3-examples boto3-examples Public

    Python 2

  5. databio/LOLAweb databio/LOLAweb Public

    An interactive Shiny web application for genomic interval enrichment analysis using LOLA.

    R 16 2

  6. refgenie/refgenieserver refgenie/refgenieserver Public

    Serves a web interface and RESTful API for reference genome assets.

    Python 13 4