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This is a TxDb package created for Coffea arabica (coffee).

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pipaber/TxDb.Carabica.NCBI

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TxDb.Carabica.NCBI

This is a TxDb package created for Coffea arabica (coffee). The genome used for this package is Cara_1.0 retrieved from NCBI

Installation

remotes::install_github("pipaber/TxDb.Carabica.NCBI")

Usage

library(TxDb.Carabica.NCBI)
txdb <- TxDb.Carabica.NCBI

# Extract genes
g = genes(txdb)
g

# Extract exons by genes (GRangesList)
ex = exonsBy(txdb, by = "gene")

# Extract transcripts

tr = transcriptsBy(txdb, by = "gene")

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This is a TxDb package created for Coffea arabica (coffee).

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