Computer code in D used for discrete model simulations and Julia code for continuum model simulations presented in the research article Mechanical cell interactions on curved interfaces by Pascal R Buenzli, Shahak Kuba, Ryan J Murphy, and Matthew J Simpson (2024). Preprint available at: https://arxiv.org/abs/2406.19197.
See instructions in src/main.d for how to run and visualise the discrete model.
Run Model 4 with N=4, m=4, Hookean force in model_inputs.d;
Plot with n=1 coil periods per spring in snapshot.py => snapshot.pdf (Figs 3);
Plot trajectories.py => trajectories.pdf (Fig 4a).
Run Model 0 with N=4, m=1, Hookean force, either straight_springs or curved_springs in model_inputs.d;
Plot with n=4 coil periods per spring in snapshot.py => snapshot.pdf.
Run Model 2 with N=8, m=1 or m=8, or Model 2c with N=7, m=1 or m=8, either straight_springs or curved_springs in model_inputs.d;
Plot m=1 snapshots with n=4 coil periods per spring in snapshot.py => snapshot.pdf
Run Model 0 with N=8, m=1,2,4,or 8, t_end=2, and either hookean_force, lineardiff_force, or porousdiff_force in model_inputs.d;
Run spring-diffusion-continuum.jl after selecting the corresponding force law.
Plot: profiles.py => profiles.pdf (Fig 8) (uses linux command line tools sed, awk, tail, head to plot with fsteps and periodic BC)
