remove dof from colnames before making props #371
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| name: Piff CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - runci | |
| - releases/* | |
| pull_request: | |
| branches: | |
| - main | |
| - runci | |
| - releases/* | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # First all python versions in basic linux | |
| os: [ ubuntu-latest ] | |
| py: [ 3.7, 3.8, 3.9, "3.10", 3.11, 3.12 ] | |
| CC: [ gcc ] | |
| CXX: [ g++ ] | |
| FFTW_DIR: [ "/usr/local/lib/" ] | |
| # Add some other particular combinations to test | |
| include: | |
| # A couple in MacOS | |
| # I've been getting random seg faults in macos runs lately. | |
| # Note sure what the problem is, but for now just disable macos CI. | |
| #- os: macos-latest | |
| #- os: macos-13 | |
| #py: "3.10" | |
| #CC: cc | |
| #CXX: c++ | |
| #FFTW_DIR: "/opt/homebrew/lib/" | |
| #FFTW_DIR: "/usr/local/lib" | |
| # Check one with clang compiler | |
| - os: ubuntu-latest | |
| py: 3.11 | |
| CC: clang | |
| CXX: clang++ | |
| FFTW_DIR: "/usr/local/lib/" | |
| env: | |
| # Need to put this here. export doesn't work. | |
| # cf. https://github.com/orgs/community/discussions/26013 | |
| FFTW_DIR: ${{ matrix.FFTW_DIR }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| # Helpful for a reliable codecov upload. | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.py }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.py }} | |
| - name: Cache pip | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.cache/pip | |
| $HOME/Library/Caches/Homebrew | |
| /usr/local/Cellar | |
| key: ${{ runner.os }}-${{ matrix.py }}-pip-${{ hashFiles('requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.py }}-pip- | |
| ${{ runner.os }}- | |
| - name: Install libfftw, etc. on linux (needed for GalSim) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| echo ${{ matrix.os }} | |
| sudo -H apt update -y | |
| sudo -H apt install -y libfftw3-dev libeigen3-dev | |
| ls $FFTW_DIR | |
| - name: Install libfftw, etc. on MacOS | |
| if: matrix.os == 'macos-13' | |
| run: | | |
| echo ${{ matrix.os }} | |
| brew update || true | |
| brew install fftw eigen || true | |
| brew link --overwrite fftw eigen || true | |
| ls -lF /usr/local | |
| ls -lF /usr/local/lib | |
| ls -lF /usr/local/Cellar | |
| ls $FFTW_DIR | |
| - name: Install dependencies with pip | |
| run: | | |
| python -m pip install -U pip | |
| # Do these first to clarify potential conflicts | |
| pip install -U numpy | |
| pip install -U setuptools | |
| pip install -U wheel | |
| # The prefix is required for recent MacOS, because of System Integrity Protection. | |
| # It's not necessary on Linux, but is harmless enough. | |
| FFTW_DIR=$FFTW_DIR pip install -U galsim | |
| # Standard dependencies | |
| pip install -U -r requirements.txt | |
| # Extra packages needed for testing | |
| # Note: Pin pillow <10 until this bug is fixed: | |
| # https://github.com/python-pillow/Pillow/issues/7259 | |
| pip install -U nose coverage "pytest<8" nbval ipykernel "pillow<10" | |
| - name: Install Pixmappy (not on pip) | |
| run: | | |
| git clone https://github.com/gbernstein/pixmappy.git | |
| cd pixmappy | |
| pip install -vvv . | |
| cd .. | |
| - name: List all installed packages for reference | |
| run: pip list | |
| - name: Enable Agg backend | |
| # The .matplotlib file needs to be in $HOME to work right. | |
| run: | | |
| cp -r tests/.matplotlib $HOME | |
| - name: Build Piff | |
| run: pip install -vvv . | |
| - name: Run unit tests | |
| run: | | |
| cd tests | |
| coverage run -m pytest -v | |
| coverage combine || true | |
| coverage report | |
| coverage xml | |
| ls -lsart | |
| cd .. # N.B. This seems to happen automatically if omitted. | |
| # Less confusing to include it explicitly. | |
| - name: Test Tutorial notebook | |
| if: matrix.py == 3.9 | |
| run: | | |
| cd examples | |
| pytest --nbval Tutorial.ipynb --sanitize-with sanitize.cfg --current-env | |
| cd .. | |
| - name: Upload coverage to codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: tests/coverage.xml | |
| fail_ci_if_error: true # optional (default = false) | |
| verbose: true # optional (default = false) |