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I will be super slow to respond for a few weeks.
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I will be super slow to respond for a few weeks.
238 followers · 174 following

Achievements

Achievement: Pair Extraordinairex4Achievement: YOLOAchievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex4Achievement: YOLOAchievement: Starstruckx2Achievement: Pull Sharkx3Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@staphopia @Read-Lab-Confederation @conda-forge @bioconda @MetaSUB @bactopia
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rpetit3/README.md

Yo! 👋

Hello, I'm Robert Petit (puh-teet, not pet-it)! I currently work as a bioinformatician in the Wyoming Public Health Laboratory. In my personal time I am continuing to develop Bactopia, a bacterial genome analysis pipeline.

  • 💻 Things I use daily: Nextflow, Conda, Unix, Python
  • 🌱 I’m currently learning Github Actions
  • 💬 Ask me about: Bactopia and Bioconda
  • ⚡ Fun fact: I'm the third Robert, in a line of Bobs
  • 🔥 Hot take: Pecan is pronounced PEE-CAN!

Pinned Loading

  1. bactopia/bactopia bactopia/bactopia Public

    A flexible pipeline for complete analysis of bacterial genomes

    Nextflow 382 66

  2. fastq-dl fastq-dl Public

    Download FASTQ files from SRA or ENA repositories.

    Python 268 24

  3. dragonflye dragonflye Public

    🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads

    Perl 109 10

  4. fastq-scan fastq-scan Public

    Output FASTQ summary statistics in JSON format

    C++ 29 1

  5. vcf-annotator vcf-annotator Public

    Add biological annotations to variants in a given VCF file.

    Python 26 5

  6. staphopia/staphopia-sccmec staphopia/staphopia-sccmec Public

    A standalone version of Staphopia's SCCmec typing method.

    Python 12 2