uab_ngs

Scripts for use with the UAB Cheaha cluster (SGE based scheduler)

Name		Name	Last commit message	Last commit date
Latest commit History 198 Commits
abyss		abyss
annovar		annovar
basespace		basespace
blast		blast
blat		blat
box		box
bwa		bwa
complete_genomics		complete_genomics
excel		excel
fastq		fastq
fastqc		fastqc
fastx		fastx
galaxy		galaxy
gatk		gatk
kraken		kraken
linux_plus		linux_plus
lts		lts
ont		ont
rnaseq		rnaseq
sample_job		sample_job
samtools		samtools
sge		sge
slurm		slurm
snpeff		snpeff
ssh		ssh
tabix		tabix
tophat		tophat
ucsc		ucsc
usearch		usearch
utils		utils
vcf		vcf
vicuna		vicuna
.gitignore		.gitignore
PIPELINE_PARALLEL_3.posthoc.sh		PIPELINE_PARALLEL_3.posthoc.sh
PipelineMasterScript.sh		PipelineMasterScript.sh
README.md		README.md
TARGET_GENE_LIST.txt		TARGET_GENE_LIST.txt
sample_list		sample_list
uab_ngs_functions_v1.sh		uab_ngs_functions_v1.sh
uab_ngs_functions_v2.sh		uab_ngs_functions_v2.sh

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