-
Notifications
You must be signed in to change notification settings - Fork 242
Issues: samtools/bcftools
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
bcftools call only sometimes outputs the
INFO/HWE
and INFO/G3
fields
#2226
opened Jul 10, 2024 by
hjeremyli
norm --remove-duplicates should keep the --old-rec-tag INFO field
#2225
opened Jul 10, 2024 by
davmlaw
how to use plot-roh.py to draw the plot by using the "bcftools roh" output
#2223
opened Jul 8, 2024 by
lxwgcool
bcftools norm shifts symbolic <DEL> to position 1 without warning if the END tag is missing from VCF
#2216
opened Jul 1, 2024 by
davmlaw
norm remove dupes doesn't handle symbolic and non-symbolic duplicates
#2199
opened May 30, 2024 by
davmlaw
bcftools mpileup + call seemingly confident in allele only present in a few reads?
requires-test-case
#2185
opened May 17, 2024 by
emos8710
"bcftools norm -m -any" prdocues "."
htslib-dependent
Cannot be fixed until htslib is fixed
#2173
opened Apr 29, 2024 by
shahamer
Could bcftools report all states of characters for very low coverage?
#2141
opened Mar 26, 2024 by
Axze-rgb
bcftools reheader Incomplete File if Output Same as Input
enhancement
#2140
opened Mar 26, 2024 by
DarioS
bcftools norm -m +any
gives incorrect AN
value when SNP and INDEL entries are merged
#2137
opened Mar 24, 2024 by
Fan-iX
Incorrect interpretation of fixed ALT homozygotes from bcftools filter?
requires-test-case
#2123
opened Mar 8, 2024 by
pmoizerv
Previous Next
ProTip!
no:milestone will show everything without a milestone.