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@sanger-bentley-group

Bentley Group, Wellcome Sanger Institute

Genomics of Pneumonia, Meningitis and Neonatal Sepsis

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  1. gps-pipeline gps-pipeline Public

    Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)

    Nextflow 10 3

Repositories

Showing 10 of 13 repositories
  • seroba Public Forked from sanger-pathogens/seroba

    A Fork of the Original SeroBA

    sanger-bentley-group/seroba’s past year of commit activity
    Python 0 16 0 1 Updated Jul 19, 2024
  • gps-database-processor Public

    All-in-one tool to validate GPS (Global Pneumococcal Sequencing Project) database source files, generate inferred data, and export GPS Database Overview and Monocle compatible files

    sanger-bentley-group/gps-database-processor’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jul 11, 2024
  • gps-project-website-react Public

    Rebuild of the GPS Project Website in React.js

    sanger-bentley-group/gps-project-website-react’s past year of commit activity
    JavaScript 1 MIT 0 0 0 Updated Jun 26, 2024
  • gps-database-overview Public

    Visualisation of publicly available GPS (Global Pneumococcal Sequencing Project) data that can be accessed via Monocle.

    sanger-bentley-group/gps-database-overview’s past year of commit activity
    JavaScript 1 GPL-3.0 0 0 0 Updated Jun 26, 2024
  • cps_extractor Public

    NextFlow pipeline which extracts capsular locus sequences (CPS) and checks for disruptive mutations

    sanger-bentley-group/cps_extractor’s past year of commit activity
    Python 1 1 1 0 Updated Jun 21, 2024
  • deep_seq_analysis Public
    sanger-bentley-group/deep_seq_analysis’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Jun 20, 2024
  • gps-pipeline Public

    Nextflow Pipeline for processing Streptococcus pneumoniae sequencing raw reads (FASTQ files) by the GPS Project (Global Pneumococcal Sequencing Project)

    sanger-bentley-group/gps-pipeline’s past year of commit activity
    Nextflow 10 GPL-3.0 3 1 0 Updated Jun 13, 2024
  • GBS_QC_nf Public
    sanger-bentley-group/GBS_QC_nf’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated May 10, 2024
  • AtoZ_PneumoGenomics Public

    Materials for the "Pneumococcal Genomics A to Z" workshop at ISPPD 2024

    sanger-bentley-group/AtoZ_PneumoGenomics’s past year of commit activity
    1 0 0 0 Updated Mar 13, 2024
  • spn-pbp-amr Public Forked from pathogenwatch-oss/spn-resistance-pbp

    PBP resistance assignment for Streptococcus pneumoniae

    sanger-bentley-group/spn-pbp-amr’s past year of commit activity
    Perl 0 MIT 1 0 0 Updated Oct 2, 2023
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