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  1. Wastewater_Analysis_Pipeline Wastewater_Analysis_Pipeline Public

    A bioinformatics pipeline for analysis of SARS-CoV-2 from wastewater samples

    Python 1 1

  2. Gut-Bacterial-Communities-of-Healthy-Individuals-Resilient-to-Prophage-Induction-by-Antibiotics Gut-Bacterial-Communities-of-Healthy-Individuals-Resilient-to-Prophage-Induction-by-Antibiotics Public

    Project for looking at prophage induction of MAGs by antibiotics

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  3. Bacteriophages_Playing_Nice Bacteriophages_Playing_Nice Public

    For the paper 'Bacteriophages Playing Nice: Lysogenic Bacteriophage Replication Stable in the Human Gut Microbiota'

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  4. ww_benchmark ww_benchmark Public

    Forked from suskraem/ww_benchmark

    Synthetic samples for the benchmarking of wastewater variant detection pipelines

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  5. Wastewater_surveillance_pipeline Wastewater_surveillance_pipeline Public

    Forked from arnaud00013/Wastewater_surveillance_pipeline

    This repository contains a suite of tools for analyzing within-sample genetic diversity of SARS-CoV-2 in Wastewater (WW) samples

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  6. biofx_python biofx_python Public

    Forked from kyclark/biofx_python

    Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

    Python