version 1.0.0 is upon us

README.md

@@ -1,14 +1,16 @@
 Pyvolve
 ============
 
-Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution. **Please ensure you are using the most up-to-date version of Pyvolve! The current version is v0.9.2.** 
+Pyvolve is an open-source Python module for simulating sequences along a phylogenetic tree according to continuous-time Markov models of sequence evolution. **Please ensure you are using the most up-to-date version of Pyvolve! The current version is 1.0.0.** 
 
 A detailed user manual for Pyvolve is available [here](https://github.com/sjspielman/pyvolve/raw/master/user_manual/pyvolve_manual.pdf), and API documentation for Pyvolve is available at [https://sjspielman.github.io/pyvolve](https://sjspielman.github.io/pyvolve).
 
 Pyvolve has several dependencies:
 * [Biopython](http://biopython.org/wiki/Download)
 * [Scipy and Numpy](http://www.scipy.org/install.html) (with Numpy >= 1.7)
 
+Currently, `pyvolve` development is occurring in Python3.x with absolutely no plans to return to Python2. The following examples therefore assume Python3 (which you may have on your computer named as `python3` and not `python`!)
+
 You can install Pyvolve directly using `pip` or `easy_install` (note that, if needed, these lines will install any missing dependencies for you!):
 ```bash
 pip install pyvolve
@@ -34,7 +36,6 @@ python setup.py install --user
 ```
 
 Please file any bugs and/or relay any questions under the Issues tab: [https://github.com/sjspielman/pyvolve/issues](https://github.com/sjspielman/pyvolve/issues).
-Note that pyvolve itself is implemented for both Python2 and Python3, although its tests (``python setup.py test``) are implemented for Python2 specifically.
 
 *If you use Pyvolve in your research, please cite the following:* <br>
 Spielman, SJ and Wilke, CO. 2015. [**Pyvolve: A flexible Python module for simulating sequences along phylogenies**](http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0139047). PLOS ONE. 10(9): e0139047.

setup.py

@@ -21,7 +21,7 @@
     python setup.py build --user # where user is the computer account to install pyolve in
 '''
 
-_VERSION="0.9.2"
+_VERSION="1.0.0"
 
 from setuptools import setup
 setup(name = 'Pyvolve', 

src/__init__.py

@@ -25,7 +25,7 @@
 
 
 """
-__version__ = '0.9.2'
+__version__ = '1.0.0'
 from .model import *
 from .newick import *
 from .evolver import *