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Statens Serum Institut

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Repositories

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  • sofi_core_gitops Public

    GitOps configuration for the sofi_core Kubernetes cluster

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    0 1 0 0 Updated Jul 5, 2024
  • diseasy Public
    ssi-dk/diseasy’s past year of commit activity
    R 2 0 17 (1 issue needs help) 7 Updated Jul 5, 2024
  • sofi_core Public
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    Python 1 0 4 28 Updated Jul 4, 2024
  • refseq_fastq_downloader Public
    ssi-dk/refseq_fastq_downloader’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jul 2, 2024
  • bio_api Public

    REST API for triggering bioinformatic calculations from SOFI

    ssi-dk/bio_api’s past year of commit activity
    Python 0 0 0 4 Updated Jul 1, 2024
  • microreact_integration Public

    Python code for integrating with Microreact

    ssi-dk/microreact_integration’s past year of commit activity
    Python 2 MIT 0 0 1 Updated Jul 1, 2024
  • bifrost_sp_ecoli Public

    Ecoli related analysis for the SOFI platform.

    ssi-dk/bifrost_sp_ecoli’s past year of commit activity
    Python 0 0 0 0 Updated Jun 28, 2024
  • bps_fbi_sp_ecoli Public

    Ecoli species specific scripts in nbdev2 format.

    ssi-dk/bps_fbi_sp_ecoli’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Jun 25, 2024
  • ecoli_fbi Public

    Determines the serotype and virulence in Escherichia coli isolates using NGS data (reads) through kmer alignment.

    ssi-dk/ecoli_fbi’s past year of commit activity
    Python 0 0 0 0 Updated Jun 25, 2024
  • cdiff_fbi Public

    Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).

    ssi-dk/cdiff_fbi’s past year of commit activity
    ASP.NET 0 MIT 0 0 0 Updated Jun 24, 2024
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