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St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 342 28

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 37 11

  3. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 35 20

  4. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 29 13

  5. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 21 9

  6. cis-x cis-x Public

    Search for activating regulatory variants in the tumor genome

    Perl 14 8

Repositories

Showing 10 of 44 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    stjude/proteinpaint’s past year of commit activity
    JavaScript 13 3 55 4 Updated Jul 8, 2024
  • seaseq Public

    Abraham's lab - ChipSeq Pipeline

    stjude/seaseq’s past year of commit activity
    WDL 6 Apache-2.0 5 0 0 Updated Jun 11, 2024
  • ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    stjude/ROSE’s past year of commit activity
    Python 37 11 7 0 Updated May 1, 2024
  • dab_detector Public

    Scripts and classes for DAB plaque detection

    stjude/dab_detector’s past year of commit activity
    MATLAB 0 GPL-2.0 0 0 0 Updated Apr 5, 2024
  • DeepBrainIPP Public

    Automated Brain Structures Segmentation Framework

    stjude/DeepBrainIPP’s past year of commit activity
    Python 7 Apache-2.0 3 0 1 Updated Mar 22, 2024
  • doCNA Public
    stjude/doCNA’s past year of commit activity
    Python 2 1 1 0 Updated Feb 27, 2024
  • Mouse_Survival Public
    stjude/Mouse_Survival’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Feb 6, 2024
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    stjude/CICERO’s past year of commit activity
    Perl 35 20 7 0 Updated Jan 24, 2024
  • RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    stjude/RNAIndel’s past year of commit activity
    Python 21 Apache-2.0 9 0 0 Updated Jan 23, 2024
  • indelPost Public

    Python library for simple and complex indels.

    stjude/indelPost’s past year of commit activity
    C 12 Apache-2.0 3 0 0 Updated Jan 22, 2024
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