Skip to content

Commit

Permalink
stub
Browse files Browse the repository at this point in the history
  • Loading branch information
telatin committed Feb 16, 2024
1 parent 27de865 commit ccae546
Showing 1 changed file with 45 additions and 0 deletions.
45 changes: 45 additions & 0 deletions .github/workflows/ci.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,45 @@
name: nextflow-ci
# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
on:
push:
branches:
- main
pull_request:

env:
NXF_ANSI_LOG: false
CAPSULE_LOG: none

jobs:
test:
name: Run pipeline with test data
# Only run on push if this is the nf-core dev branch (merged PRs)
if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'telatin/getreads') }}"
runs-on: ubuntu-latest
strategy:
matrix:
# Nextflow versions
include:
# Test pipeline minimum Nextflow version
- NXF_VER: "23.10.0"
NXF_EDGE: ""
# Test latest edge release of Nextflow
- NXF_VER: ""
NXF_EDGE: "1"
steps:
- name: Check out pipeline code
uses: actions/checkout@v2

- name: Install Nextflow
env:
NXF_VER: ${{ matrix.NXF_VER }}
# Uncomment only if the edge release is more recent than the latest stable release
# See https://github.com/nextflow-io/nextflow/issues/2467
# NXF_EDGE: ${{ matrix.NXF_EDGE }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Test pipeline
run: |
nextflow run ${GITHUB_WORKSPACE} -profile docker -stub || find /home/runner/work/getreads/getreads/work/ -name "*.log" | xargs grep "^."

0 comments on commit ccae546

Please sign in to comment.